{"id":90,"date":"2023-01-31T18:44:24","date_gmt":"2023-01-31T18:44:24","guid":{"rendered":"https:\/\/academic.csuohio.edu\/adam\/?page_id=90"},"modified":"2026-02-20T18:27:01","modified_gmt":"2026-02-20T18:27:01","slug":"publications","status":"publish","type":"page","link":"https:\/\/academic.csuohio.edu\/adam\/publications\/","title":{"rendered":"Publications"},"content":{"rendered":"\n<h1 class=\"wp-block-heading\">Select ADAM Members and Publications<\/h1>\n\n\n\n<h3 class=\"wp-block-heading\"> PUBLISHED \/ ACCEPTED:<\/h3>\n\n\n\n<ul class=\"wp-block-list\">\n<li><strong>&#8220;Spatial characterizations of bacterial dynamics for food safety: Modeling for shared water processing environments&#8221;<\/strong> D. Munther, S. D. Ryan, C. Kothapalli, N. Zekaj, <em>Accepted to Applied Mathematical Modeling<\/em>, (2024). <a href=\"https:\/\/www.biorxiv.org\/content\/10.1101\/2024.11.04.621859v1.full.pdf\">Preprint on BioRxiv <\/a><\/li>\n\n\n\n<li> <a href=\"https:\/\/link.springer.com\/article\/10.1007\/s00285-024-02136-2?utm_source=rct_congratemailt&amp;utm_medium=email&amp;utm_campaign=oa_20240912&amp;utm_content=10.1007%2Fs00285-024-02136-2\"><strong>&#8220;Walk This Way: Modeling Foraging Ant Dynamics in Multiple Food Source Environments&#8221;<\/strong> <\/a> S. Hartman, S. D. Ryan, B. R. Karamched, <em>Journal of Mathematical Biology<\/em>&nbsp;<strong>89<\/strong>(41)&nbsp;(2024). <a href=\"https:\/\/doi.org\/10.1101\/2024.01.20.576461\">Preprint on BioRxiv <\/a><\/li>\n\n\n\n<li><a href=\"https:\/\/link.springer.com\/article\/10.1007\/s00467-024-06456-9\"><strong>&#8220;External Validation of a Clinical Mathematical Model Estimating Postoperative Urine Output Following Cardiac Surgery <\/strong> <\/a><strong>in Children&#8221;<\/strong> O. Baloglu*, B. S. Marino, S. Q. Latifi, A. Morca, D. S. Munther, S. D. Ryan, <em>J. Pediatric Nephrology<\/em> 1-6, (2024).<\/li>\n\n\n\n<li><a href=\"https:\/\/journals.plos.org\/ploscompbiol\/article?id=10.1371\/journal.pcbi.1011416\"><strong>\u201cAgent-based modeling of nuclear chromosome ensemble identifies determinants of homolog pairing during meiosis<\/strong><strong>\u201c<\/strong> <\/a>&nbsp;A. Chriss, G. V. B\u00f6rner, S. D. Ryan,&nbsp;<em>Accepted to PLoS Computational Biology<\/em>, (2024).&nbsp;<a href=\"https:\/\/www.biorxiv.org\/content\/10.1101\/2023.08.09.552574v2.full.pdf\">Preprint on BioRxiv <\/a>&nbsp;<\/li>\n\n\n\n<li><a href=\"https:\/\/epubs.siam.org\/doi\/abs\/10.1137\/24N97602X\"><strong>&#8220;Book Review: Mathematical Modeling in Biology: A Research Methods Approach&#8221;<\/strong> <\/a> S. D. Ryan <em>SIREV: SIAM Review<\/em>, Editor: A. T. Layton, <strong>66<\/strong>(4): 795-805 (2024).<\/li>\n\n\n\n<li><a href=\"https:\/\/link.springer.com\/article\/10.1007\/s40746-023-00274-1\"><strong>\u201cNoninvasive cardiac output monitoring in congenital heart disease\u201d&nbsp;<\/strong> <\/a>A. Tandon, S. Bhattacharya, O. T. Inan, J. Lasa, S. Latifi, N. Lu, B. Marino, A. Morca, D. Munther, S. D. Ryan, O. Baloglu,&nbsp;<em>Current Treatment Options in Pediatrics<\/em>&nbsp;(2023).<\/li>\n\n\n\n<li><a href=\"https:\/\/www.aimspress.com\/article\/doi\/10.3934\/mbe.2023172\"><strong>&#8220;Fluid-Structure Interaction Modelling of Neighboring Tubes with Primary Cilium Analysis&#8221;<\/strong> <\/a>&nbsp;N. Zekaj, S. D. Ryan, and A. Resnick&nbsp;<em>Mathematical Biosciences and Engineering<\/em>,&nbsp;<strong>20<\/strong>(2) 3677-3699(2023).<\/li>\n\n\n\n<li><a href=\"https:\/\/doi.org\/10.1016\/j.bpr.2022.100085\"><strong>&#8220;The Space Between Us: Modeling Spatial Heterogeneity in Synthetic Microbial Consortia Dynamics&#8221;<\/strong> <\/a>&nbsp;R. Godin, B. Karamched, and S. D. Ryan&nbsp;<em>Biophysical Reports<\/em>,&nbsp;<strong>2<\/strong>(4) 100085 (2022).<\/li>\n\n\n\n<li><a href=\"https:\/\/www.thieme-connect.com\/products\/ejournals\/abstract\/10.1055\/s-0042-1758474\"><strong>&#8220;A Clinical Mathematical Model Estimating Postoperative Urine Output in Children Underwent Cardiopulmonary By-pass for Congenital Heart Surgery&#8221;<\/strong> <\/a>&nbsp;O. Baloglu, S. D. Ryan, A. Onder, D. Rosen, C. J. Mullett, D. Munther&nbsp;<em>Journal of Pediatric Intensive Care<\/em>&nbsp;(2022).<\/li>\n\n\n\n<li><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/36230928\/\"><strong>&#8220;Tracing Translational Footprint by Ribo-Seq: Principle, Workflow, and Applications to Understand the Mechanism of Human Diseases&#8221;<\/strong> <\/a>&nbsp;A. Bagheri, A. Astafev, T. Al-Hasimy, P. Jeng&nbsp;<em>Cells<\/em>&nbsp;<strong>11<\/strong>(19), 2966 (2022).<\/li>\n\n\n\n<li><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/36039923\/\"><strong>&#8220;Transcriptomic, Proteomic, and Morphologic Characterization of Healing in Volumetric Muscle Loss&#8221;<\/strong> <\/a>&nbsp;R. J. Crum, S. A. Johnson, P. Jiang, et al.&nbsp;<em>Tissue Eng Part A<\/em>&nbsp;(2022).<\/li>\n\n\n\n<li><a href=\"https:\/\/www.sciencedirect.com\/science\/article\/pii\/S0927775721010608\"><strong>&#8220;Influence of PEG on the Clustering of Active Janus Colloid&#8221;<\/strong> <\/a>&nbsp;M. Kalil, N. Baumgartner, M. Issa, S. D. Ryan, C. Wirth&nbsp;<em>Colloids and Surfaces A: Physicochemical and Engineering Aspects<\/em>&nbsp;<strong>627<\/strong>, 127191 (2021). Preprint:&nbsp;<a href=\"https:\/\/arxiv.org\/pdf\/2101.06206.pdf\">arXiv <\/a><\/li>\n\n\n\n<li><a href=\"https:\/\/www.tandfonline.com\/doi\/full\/10.1080\/10511970.2021.1905121\"><strong>&#8220;An OER Approach to Linear Algebra&#8221;<\/strong> <\/a>&nbsp;S. D. Ryan and T. M. Nawalaniec&nbsp;<em>PRIMUS<\/em>, 1-17 (2021).<\/li>\n\n\n\n<li><strong>&#8220;Heterogeneous Bacterial Swarms with Mixed Lengths&#8221;<\/strong>&nbsp;S. Peled, S. D. Ryan, S. Heidenreich, M. Bar, G. Ariel, A. Be&#8217;er&nbsp;<em>Phys. Rev. E<\/em>,&nbsp;<strong>103<\/strong>&nbsp;032413(2021). Preprint:&nbsp;<a href=\"https:\/\/arxiv.org\/pdf\/2011.12612.pdf\">arXiv Preprint <\/a><\/li>\n\n\n\n<li><a href=\"https:\/\/link.springer.com\/article\/10.1007%2Fs11538-020-00838-4\"><strong>&#8220;Motor Protein Transport Along Inhomogeneous Microtubules&#8221;<\/strong> <\/a>&nbsp;S. D. Ryan, Z. McCarthy, M. Potomkin,&nbsp;<em>Bulletin of Mathematical Biology<\/em>&nbsp;<strong>83<\/strong>(9):1-29, (2021).&nbsp;<a href=\"https:\/\/arxiv.org\/pdf\/2005.01955.pdf\">Preprint <\/a><\/li>\n\n\n\n<li><a href=\"https:\/\/www.sciencedirect.com\/science\/article\/pii\/S0025556420301371?dgcid=author\"><strong>&#8220;Model for Ant\/Crab Interactions on Christmas Island<\/strong> <\/a>, N. Baumgartner, S. D. Ryan,&nbsp;<em>Mathematical Biosciences<\/em>,&nbsp;<strong>330<\/strong>&nbsp;108486 (2020).<\/li>\n\n\n\n<li><a href=\"https:\/\/www.mdpi.com\/2073-4433\/11\/8\/824\/htm\"><strong>&#8220;Reconciling chord length distributions and area distributions for fields of fractal cumulus clouds&#8221;<\/strong> <\/a>&nbsp;N. Barron, S. D. Ryan, T. Heus,&nbsp;<em>Atmospheres<\/em>&nbsp;<strong>11<\/strong>(8) 824 (2020).<\/li>\n\n\n\n<li><a href=\"https:\/\/agupubs.onlinelibrary.wiley.com\/doi\/abs\/10.1029\/2019JD032017\"><strong>&#8220;The contributions of shear and turbulence to cloud overlap for cumulus clouds&#8221;<\/strong> <\/a>&nbsp;A. Sulak, B. Calabrase, S. D. Ryan, T. Heus,&nbsp;<em>Journal of Geophysical Research: Atmospheres<\/em>&nbsp;<strong>125<\/strong>&nbsp;(2020).&nbsp;<a href=\"https:\/\/www.essoar.org\/doi\/pdf\/10.1002\/essoar.10501109.1\">Preprint <\/a><\/li>\n<\/ul>\n\n\n\n<ul class=\"wp-block-list\">\n<li><a href=\"https:\/\/iopscience.iop.org\/article\/10.1088\/1478-3975\/ab57af\"><strong>&#8220;Role of hydrodynamic interactions in chemotaxis of bacterial populations&#8221;<\/strong> <\/a>&nbsp;S. D. Ryan,&nbsp;<em>Physical Biology<\/em>,&nbsp;<strong>17<\/strong>&nbsp;016003 (2020).<\/li>\n\n\n\n<li><em>Press: Featured Article on Phys. Biology Homepage Dec. 2019 &#8211; Feb. 2020<\/em><\/li>\n\n\n\n<li><a href=\"https:\/\/www.aimspress.com\/article\/10.3934\/mbe.2020094\"><strong>&#8220;Pulsatile Flow Through Idealized Renal Tubules: Fluid-Structure Interaction and Dynamic Pathologies&#8221;<\/strong> <\/a>&nbsp;N. Praljak, S. D. Ryan, A. Resnick&nbsp;<em>Accepted to Mathematical Biosciences and Engineering<\/em>,&nbsp;<strong>17<\/strong>(2) 1787-1807 (2020).<\/li>\n\n\n\n<li><a href=\"https:\/\/pubs.acs.org\/doi\/pdf\/10.1021\/acsomega.9b00765?rand=6v71dzv2\"><strong>&#8220;Charged Nanoparticles Quench the Propulsion of Active Janus Colloids&#8221;<\/strong> <\/a>&nbsp;M. Issa, N. Baumgartner, M. Kalil, S. D. Ryan, C. Wirth,&nbsp;<em>ACS Omega<\/em>,&nbsp;<strong>4<\/strong>(8) 13034-13041 (2019).<\/li>\n<\/ul>\n","protected":false},"excerpt":{"rendered":"<p>Select ADAM Members and Publications PUBLISHED \/ ACCEPTED:<\/p>\n","protected":false},"author":26,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_relevanssi_hide_post":"","_relevanssi_hide_content":"","_relevanssi_pin_for_all":"","_relevanssi_pin_keywords":"","_relevanssi_unpin_keywords":"","_relevanssi_related_keywords":"","_relevanssi_related_include_ids":"","_relevanssi_related_exclude_ids":"","_relevanssi_related_no_append":"","_relevanssi_related_not_related":"","_relevanssi_related_posts":"","_relevanssi_noindex_reason":"","footnotes":""},"class_list":["post-90","page","type-page","status-publish","hentry"],"featured_image_src":null,"_links":{"self":[{"href":"https:\/\/academic.csuohio.edu\/adam\/wp-json\/wp\/v2\/pages\/90","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/academic.csuohio.edu\/adam\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/academic.csuohio.edu\/adam\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/academic.csuohio.edu\/adam\/wp-json\/wp\/v2\/users\/26"}],"replies":[{"embeddable":true,"href":"https:\/\/academic.csuohio.edu\/adam\/wp-json\/wp\/v2\/comments?post=90"}],"version-history":[{"count":7,"href":"https:\/\/academic.csuohio.edu\/adam\/wp-json\/wp\/v2\/pages\/90\/revisions"}],"predecessor-version":[{"id":164,"href":"https:\/\/academic.csuohio.edu\/adam\/wp-json\/wp\/v2\/pages\/90\/revisions\/164"}],"wp:attachment":[{"href":"https:\/\/academic.csuohio.edu\/adam\/wp-json\/wp\/v2\/media?parent=90"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}