SELECT ADAM MEMBER PUBLICATIONS
PUBLISHED / ACCEPTED:
- “Spatial characterizations of bacterial dynamics for food safety: Modeling for shared water processing environments” D. Munther, S. D. Ryan, C. Kothapalli, N. Zekaj, Accepted to Applied Mathematical Modeling, (2024). Preprint on BioRxiv
- “Walk This Way: Modeling Foraging Ant Dynamics in Multiple Food Source Environments” S. Hartman, S. D. Ryan, B. R. Karamched, Journal of Mathematical Biology 89(41) (2024). Preprint on BioRxiv
- “External Validation of a Clinical Mathematical Model Estimating Postoperative Urine Output Following Cardiac Surgery in Children” O. Baloglu*, B. S. Marino, S. Q. Latifi, A. Morca, D. S. Munther, S. D. Ryan, J. Pediatric Nephrology 1-6, (2024).
- “Agent-based modeling of nuclear chromosome ensemble identifies determinants of homolog pairing during meiosis“ A. Chriss, G. V. Börner, S. D. Ryan, Accepted to PLoS Computational Biology, (2024). Preprint on BioRxiv
- “Book Review: Mathematical Modeling in Biology: A Research Methods Approach” S. D. Ryan SIREV: SIAM Review, Editor: A. T. Layton, 66(4): 795-805 (2024).
- “Noninvasive cardiac output monitoring in congenital heart disease” A. Tandon, S. Bhattacharya, O. T. Inan, J. Lasa, S. Latifi, N. Lu, B. Marino, A. Morca, D. Munther, S. D. Ryan, O. Baloglu, Current Treatment Options in Pediatrics (2023).
- “Fluid-Structure Interaction Modelling of Neighboring Tubes with Primary Cilium Analysis” N. Zekaj, S. D. Ryan, and A. Resnick Mathematical Biosciences and Engineering, 20(2) 3677-3699(2023).
- “The Space Between Us: Modeling Spatial Heterogeneity in Synthetic Microbial Consortia Dynamics” R. Godin, B. Karamched, and S. D. Ryan Biophysical Reports, 2(4) 100085 (2022).
- “A Clinical Mathematical Model Estimating Postoperative Urine Output in Children Underwent Cardiopulmonary By-pass for Congenital Heart Surgery” O. Baloglu, S. D. Ryan, A. Onder, D. Rosen, C. J. Mullett, D. Munther Journal of Pediatric Intensive Care (2022).
- “Tracing Translational Footprint by Ribo-Seq: Principle, Workflow, and Applications to Understand the Mechanism of Human Diseases” A. Bagheri, A. Astafev, T. Al-Hasimy, P. Jeng Cells 11(19), 2966 (2022).
- “Transcriptomic, Proteomic, and Morphologic Characterization of Healing in Volumetric Muscle Loss” R. J. Crum, S. A. Johnson, P. Jiang, et al. Tissue Eng Part A (2022).
- “Influence of PEG on the Clustering of Active Janus Colloid” M. Kalil, N. Baumgartner, M. Issa, S. D. Ryan, C. Wirth Colloids and Surfaces A: Physicochemical and Engineering Aspects 627, 127191 (2021). Preprint: arXiv
- “An OER Approach to Linear Algebra” S. D. Ryan and T. M. Nawalaniec PRIMUS, 1-17 (2021).
- “Heterogeneous Bacterial Swarms with Mixed Lengths” S. Peled, S. D. Ryan, S. Heidenreich, M. Bar, G. Ariel, A. Be’er Phys. Rev. E, 103 032413(2021). Preprint: arXiv Preprint
- “Motor Protein Transport Along Inhomogeneous Microtubules” S. D. Ryan, Z. McCarthy, M. Potomkin, Bulletin of Mathematical Biology 83(9):1-29, (2021). Preprint
- “Model for Ant/Crab Interactions on Christmas Island, N. Baumgartner, S. D. Ryan, Mathematical Biosciences, 330 108486 (2020).
- “Reconciling chord length distributions and area distributions for fields of fractal cumulus clouds” N. Barron, S. D. Ryan, T. Heus, Atmospheres 11(8) 824 (2020).
- “The contributions of shear and turbulence to cloud overlap for cumulus clouds” A. Sulak, B. Calabrase, S. D. Ryan, T. Heus, Journal of Geophysical Research: Atmospheres 125 (2020). Preprint
- “Role of hydrodynamic interactions in chemotaxis of bacterial populations” S. D. Ryan, Physical Biology, 17 016003 (2020).
- Press: Featured Article on Phys. Biology Homepage Dec. 2019 – Feb. 2020
- “Pulsatile Flow Through Idealized Renal Tubules: Fluid-Structure Interaction and Dynamic Pathologies” N. Praljak, S. D. Ryan, A. Resnick Accepted to Mathematical Biosciences and Engineering, 17(2) 1787-1807 (2020).
- “Charged Nanoparticles Quench the Propulsion of Active Janus Colloids” M. Issa, N. Baumgartner, M. Kalil, S. D. Ryan, C. Wirth, ACS Omega, 4(8) 13034-13041 (2019).